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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12677252_12681722_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12677252 - 12681722
Intron Length:
4471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGCGA
5'SS Class:
major
3'SS Sequence:
CTTTTCAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTAACTTTAAAT
Flanking Amino Acid:
DMARLLEQWEKDDDIEEGDL
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.8
43.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71.4
0.48
1
67.4
36.9
Minor 5ss
23.6
-3
3.2
29.9
43
Minor BPS
64.9
0.54
1.4
76.1
39.8

Associated Gene:

Gene:
MESD
Ensembl Gene ID:
ENSAPLG00000010995
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011439
12675993 - 12682961
6969