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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12695991_12696827_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12695991 - 12696827
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GCACTCCTAATG
Flanking Amino Acid:
LGAGEDFRLKEKMAFVGFKG
Intron Amino Acid Position:
1318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
35.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
84.9
0.78
0.8
79.6
32.4
Minor 5ss
40.9
-1
3.2
59.5
45
Minor BPS
46.7
-0.3
1.7
46.83
40

Associated Gene:

Gene:
CEMIP
Ensembl Gene ID:
ENSAPLG00000010943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011434
12695863 - 12746384
50522