About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12700340_12701067_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12700340 - 12701067
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
TTTTAATAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACTTTTTTAATA
Flanking Amino Acid:
MPKKLSSTQLKTKDHLLEVK
Intron Amino Acid Position:
1203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
61.6
39.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.8
0.49
1
67.5
41.7
Minor 5ss
35.6
-1.6
3.4
42.7
46.8
Minor BPS
71.5
0.67
1.1
72.5
34

Associated Gene:

Gene:
CEMIP
Ensembl Gene ID:
ENSAPLG00000010943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011434
12695863 - 12746384
50522