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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12701273_12701972_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12701273 - 12701972
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
ATGCTCTTCACT
Flanking Amino Acid:
KGYYYWDEDTGLLFLKLKAQ
Intron Amino Acid Position:
1134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
74.9
37
Major BPS
77.5
0.68
1
79.6
33
Major PPT
78.5
0.64
0.8
72.7
31
Minor 5ss
31.1
-2.2
3.1
31.2
42.7
Minor BPS
58.8
0.36
1.8
75.27
41.5

Associated Gene:

Gene:
CEMIP
Ensembl Gene ID:
ENSAPLG00000010943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011434
12695863 - 12746384
50522