Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12702159_12702628_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12702159 - 12702628

Intron Length:

470

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTGCTATTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

CTTGTTATAATT

Flanking Amino Acid:

ELAIWLINFNKNDWIQVGFC

Intron Amino Acid Position:

1072

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

80.3

26.9

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

80.4

0.68

0.8

78.5

34.6

Minor 5ss

30.6

-2.2

3.3

40.3

40.1

Minor BPS

52.6

0.16

1.7

71.4

40.7

Associated Gene:

Gene:

CEMIP

Ensembl Gene ID:

ENSAPLG00000010943

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011434

12695863 - 12746384

50522