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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12703973_12705694_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12703973 - 12705694
Intron Length:
1722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTTAT
5'SS Class:
major
3'SS Sequence:
CTGTTTTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATAAAT
U12 Branch Point Sequence:
TTTTTGGTGACA
Flanking Amino Acid:
VTDIHFEDVPITSRVFFGEP
Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.4
33.2
Major BPS
62.2
0.3
1.1
68.9
33
Major PPT
77
0.61
0.9
76.9
37.3
Minor 5ss
39.3
-1.2
3.1
59
45.5
Minor BPS
48
-0.1
2.6
73.38
39

Associated Gene:

Gene:
CEMIP
Ensembl Gene ID:
ENSAPLG00000010943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011434
12695863 - 12746384
50522