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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12707665_12709639_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12707665 - 12709639
Intron Length:
1975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
CTTCTCCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTCTTCTGAAGC
Flanking Amino Acid:
RGGDVWLDNCQFADNGIGLT
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
78
32.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
73.5
0.53
0.9
69.7
31
Minor 5ss
42.9
-0.8
3
63.8
41.6
Minor BPS
52.1
0.05
1.8
62.1
43.7

Associated Gene:

Gene:
CEMIP
Ensembl Gene ID:
ENSAPLG00000010943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011434
12695863 - 12746384
50522