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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12712324_12713010_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12712324 - 12713010
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TATACTGTAATG
Flanking Amino Acid:
SNNRAHSNYRAGMIIDNGVK
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
85.6
0.8
0.6
84.6
23.2
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
50.1
-0.1
2.1
60.9
41.5

Associated Gene:

Gene:
CEMIP
Ensembl Gene ID:
ENSAPLG00000010943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011434
12695863 - 12746384
50522