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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12714115_12717068_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12714115 - 12717068
Intron Length:
2954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCATCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCTCATCT
Flanking Amino Acid:
GYIPKPRQDCSAVSTFWIAN
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
79.3
0.66
0.8
73.3
30.4
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
72.1
0.77
1.8
92.57
36.2

Associated Gene:

Gene:
CEMIP
Ensembl Gene ID:
ENSAPLG00000010943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011434
12695863 - 12746384
50522