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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12717275_12722972_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12717275 - 12722972
Intron Length:
5698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTC
Flanking Amino Acid:
VTIHGSNGLLVKDVVGYDAL
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.2
0.88
0.7
89
26.7
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
73.1
0.7
1.5
81.83
32.8

Associated Gene:

Gene:
CEMIP
Ensembl Gene ID:
ENSAPLG00000010943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011434
12695863 - 12746384
50522