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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12723183_12723728_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12723183 - 12723728
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCTG
5'SS Class:
major
3'SS Sequence:
TTTTGTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
TCTTTCCTGACT
Flanking Amino Acid:
DFDTFGGHIKIGLDFKATHI
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
64.3
47.1
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
90.6
0.91
0.7
89
28.1
Minor 5ss
33
-1.9
3.6
46.2
49.1
Minor BPS
66.1
0.59
1.7
83.44
37.7

Associated Gene:

Gene:
CEMIP
Ensembl Gene ID:
ENSAPLG00000010943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011434
12695863 - 12746384
50522