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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12723905_12732737_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12723905 - 12732737
Intron Length:
8833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TAACTCTGAAAC
Flanking Amino Acid:
SCRPTQVKVEGKAAYLHVGQ
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
69.8
0.49
1
61
37.5
Major PPT
77.8
0.63
0.8
69.6
36.8
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
51.4
0.02
1.5
60.53
37.4

Associated Gene:

Gene:
CEMIP
Ensembl Gene ID:
ENSAPLG00000010943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011434
12695863 - 12746384
50522