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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12741682_12742078_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12741682 - 12742078
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TAAATAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
PKTGEAVHSDRFDTYRAKEE
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
64.8
0.33
1
60.7
44.3
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
CEMIP
Ensembl Gene ID:
ENSAPLG00000010943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011434
12695863 - 12746384
50522