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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12742316_12743106_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12742316 - 12743106
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTCATGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
AAAACCAAAATT
Flanking Amino Acid:
QGNVVISLYGRADDGSQPNP
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
74.8
41.3
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
78.7
0.65
0.9
72.5
37.3
Minor 5ss
45.9
-0.4
2.5
60.4
44.2
Minor BPS
46.6
-0.1
1.9
62.61
41

Associated Gene:

Gene:
CEMIP
Ensembl Gene ID:
ENSAPLG00000010943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011434
12695863 - 12746384
50522