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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_127894_128586_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127894 - 128586
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTAG
5'SS Class:
major
3'SS Sequence:
TCTCTTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTCTCTTCATT
Flanking Amino Acid:
ERIWLTMHFSGNSVKEYENS
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
61.6
39.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
78.6
0.64
0.8
77.9
29.8
Minor 5ss
41.5
-0.9
3.2
54.5
49.7
Minor BPS
65.6
0.57
1.7
84.73
36.1

Associated Gene:

Gene:
GLDN
Ensembl Gene ID:
ENSAPLG00000008175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008483
113675 - 132533
18859