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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1280203_1283518_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1280203 - 1283518
Intron Length:
3316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATATGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATATGATA
Flanking Amino Acid:
IPNIRTGACQDVDECQAIPG
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73
0.52
1
70.2
39.9
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
53.3
0.1
1.8
71.99
33.6

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950