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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12815707_12842400_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12815707 - 12842400
Intron Length:
26694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAT
Flanking Amino Acid:
IDAAWQALRTRYGVSPENII
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
69.5
41.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.2
0.84
0.7
82
29.2
Minor 5ss
31.4
-2.1
3.2
40.6
45.6
Minor BPS
73.6
0.82
1.3
85.52
34.2

Associated Gene:

Gene:
ABHD17C
Ensembl Gene ID:
ENSAPLG00000010893
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031401
12810895 - 12842991
32097
ENSAPLT00000011337
12811514 - 12859440
47927