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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1283717_1316400_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1283717 - 1316400
Intron Length:
32684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTGGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACTGTGATG
Flanking Amino Acid:
YGFTGPQCERDYRTGPCFTL
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
81.4
30.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
68.9
0.42
1
63.7
41.8
Minor 5ss
43.3
-0.7
3.1
60.6
44.5
Minor BPS
48.9
-0.2
2.1
62.53
40.2

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950