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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12842930_12844770_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12842930 - 12844770
Intron Length:
1841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGATGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GCGTCTCTGATG
Flanking Amino Acid:
RGRTQLATSAEQGPRMNGFS
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.5
39.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.9
0.43
1.1
62
43.3
Minor 5ss
38.3
-1.3
3.4
56.2
48
Minor BPS
46.7
-0.4
1.7
47.08
40.8

Associated Gene:

Gene:
ABHD17C
Ensembl Gene ID:
ENSAPLG00000010893
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011337
12811514 - 12859440
47927