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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12844897_12859433_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12844897 - 12859433
Intron Length:
14537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATCC
Flanking Amino Acid:
MLDCSITLLRRS
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.2
39.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
84.8
0.78
0.8
77.9
35.5
Minor 5ss
30.2
-2.3
2.6
28.5
36
Minor BPS
63.7
0.41
1.8
78.5
37.3

Associated Gene:

Gene:
ABHD17C
Ensembl Gene ID:
ENSAPLG00000010893
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011337
12811514 - 12859440
47927