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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12873108_12875536_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12873108 - 12875536
Intron Length:
2429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTATCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTTCCTTATCA
Flanking Amino Acid:
PQPSQTEVFQDMLPMPGDPT
Intron Amino Acid Position:
700

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
75.5
0.57
0.9
69.7
35.4
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
83
1.03
1.4
91.52
29.7

Associated Gene:

Gene:
ARNT2
Ensembl Gene ID:
ENSAPLG00000010837
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022314
12872636 - 12975112
102477
ENSAPLT00000042577
12872636 - 12975112
102477
ENSAPLT00000011329
12872636 - 12975112
102477
ENSAPLT00000037640
12872636 - 12975112
102477
ENSAPLT00000036994
12873009 - 12982844
109836
ENSAPLT00000023489
12872636 - 12975112
102477