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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12875674_12878187_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12875674 - 12878187
Intron Length:
2514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGCTCTCTGATT
Flanking Amino Acid:
SSLANRSAGFAEGGQSSGQF
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
79
0.72
1
69
38.9
Major PPT
85.8
0.8
0.7
77.7
31
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
55.1
0.24
1.7
72.12
39.3

Associated Gene:

Gene:
ARNT2
Ensembl Gene ID:
ENSAPLG00000010837
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023489
12872636 - 12975112
102477
ENSAPLT00000022314
12872636 - 12975112
102477
ENSAPLT00000042577
12872636 - 12975112
102477
ENSAPLT00000011329
12872636 - 12975112
102477
ENSAPLT00000037640
12872636 - 12975112
102477
ENSAPLT00000036994
12873009 - 12982844
109836