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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12878354_12880456_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12878354 - 12880456
Intron Length:
2103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGATT
5'SS Class:
major
3'SS Sequence:
CCTTATTCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTCCCTTATTC
Flanking Amino Acid:
TGNRPPFPGQQIPSQSGKAQ
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
75.5
40.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.8
0.65
0.8
76.5
31.7
Minor 5ss
37.2
-1.4
3.5
57.6
46.7
Minor BPS
66.3
0.49
1.6
74.43
36.1

Associated Gene:

Gene:
ARNT2
Ensembl Gene ID:
ENSAPLG00000010837
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023489
12872636 - 12975112
102477
ENSAPLT00000022314
12872636 - 12975112
102477
ENSAPLT00000042577
12872636 - 12975112
102477
ENSAPLT00000011329
12872636 - 12975112
102477
ENSAPLT00000037640
12872636 - 12975112
102477
ENSAPLT00000036994
12873009 - 12982844
109836