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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12880596_12883108_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12880596 - 12883108
Intron Length:
2513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAG
5'SS Class:
major
3'SS Sequence:
TCTGTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TATCCTACAAGC
Flanking Amino Acid:
FQPGHSGKTFSSSVVHVPGV
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
59.6
41.8
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
82.4
0.73
0.7
81.3
30.8
Minor 5ss
35.1
-1.7
3.4
46.5
48.8
Minor BPS
44.8
-0.4
2
58.47
40

Associated Gene:

Gene:
ARNT2
Ensembl Gene ID:
ENSAPLG00000010837
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036994
12873009 - 12982844
109836
ENSAPLT00000023489
12872636 - 12975112
102477
ENSAPLT00000022314
12872636 - 12975112
102477
ENSAPLT00000042577
12872636 - 12975112
102477
ENSAPLT00000011329
12872636 - 12975112
102477
ENSAPLT00000037640
12872636 - 12975112
102477