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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12883209_12887214_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12883209 - 12887214
Intron Length:
4006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTTCTGTGATT
Flanking Amino Acid:
FAEMFAGITASDKKMMASAS
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
72.4
32.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
34.6
-1.8
3.3
45.9
43.7
Minor BPS
58.8
0.36
2
80.58
35.7

Associated Gene:

Gene:
ARNT2
Ensembl Gene ID:
ENSAPLG00000010837
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011329
12872636 - 12975112
102477
ENSAPLT00000037640
12872636 - 12975112
102477
ENSAPLT00000036994
12873009 - 12982844
109836
ENSAPLT00000023489
12872636 - 12975112
102477
ENSAPLT00000022314
12872636 - 12975112
102477
ENSAPLT00000042577
12872636 - 12975112
102477