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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12902966_12905017_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12902966 - 12905017
Intron Length:
2052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCCA
5'SS Class:
major
3'SS Sequence:
TGGTTGGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
GTTCTGTGAACT
Flanking Amino Acid:
YCLVAIGRLQVTSSPVCMDM
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
65.1
40.5
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
62.8
0.29
1
54
45.8
Minor 5ss
31.1
-2.2
3.2
40.1
45.4
Minor BPS
49.9
0.07
2.2
74.97
41.3

Associated Gene:

Gene:
ARNT2
Ensembl Gene ID:
ENSAPLG00000010837
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023489
12872636 - 12975112
102477
ENSAPLT00000022314
12872636 - 12975112
102477
ENSAPLT00000042577
12872636 - 12975112
102477
ENSAPLT00000011329
12872636 - 12975112
102477
ENSAPLT00000037640
12872636 - 12975112
102477
ENSAPLT00000036994
12873009 - 12982844
109836