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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12913971_12914423_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12913971 - 12914423
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTATTA
5'SS Class:
major
3'SS Sequence:
CCTTTTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCCTTTTCATTT
Flanking Amino Acid:
NRITTMRKRYRNGLGPVKEG
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
70.8
35.7
Major BPS
100
1.24
0.5
100
0
Major PPT
78.4
0.64
0.8
77.7
30
Minor 5ss
40.5
-1.1
3.3
56.6
47.5
Minor BPS
47.5
-0.1
1.7
62.54
42.9

Associated Gene:

Gene:
ARNT2
Ensembl Gene ID:
ENSAPLG00000010837
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036994
12873009 - 12982844
109836
ENSAPLT00000023489
12872636 - 12975112
102477
ENSAPLT00000011329
12872636 - 12975112
102477
ENSAPLT00000042577
12872636 - 12975112
102477
ENSAPLT00000037640
12872636 - 12975112
102477