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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12931492_12935610_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12931492 - 12935610
Intron Length:
4119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGATAT
5'SS Class:
major
3'SS Sequence:
CCTTACACCTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
GCTTCCTTACAC
Flanking Amino Acid:
QLCTSENSMTGEKRNSI*
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.2
77.7
33.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
58.8
0.2
1
61.1
33.7
Minor 5ss
35
-1.7
3.1
47.6
47.9
Minor BPS
60.5
0.31
1.8
68.33
42.9

Associated Gene:

Gene:
ARNT2
Ensembl Gene ID:
ENSAPLG00000010837
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026575
12931469 - 12975112
43644