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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12938307_12940826_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12938307 - 12940826
Intron Length:
2520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTAAATGATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
GTTTCTCTAAAT
Flanking Amino Acid:
QSTADTERMARENHSEIERR
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
61.7
0.26
1.1
59.5
44.8
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
63.8
0.51
1.8
83.05
37.5

Associated Gene:

Gene:
ARNT2
Ensembl Gene ID:
ENSAPLG00000010837
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036994
12873009 - 12982844
109836
ENSAPLT00000026575
12931469 - 12975112
43644
ENSAPLT00000022314
12872636 - 12975112
102477
ENSAPLT00000042577
12872636 - 12975112
102477
ENSAPLT00000037640
12872636 - 12975112
102477