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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12944189_12950380_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12944189 - 12950380
Intron Length:
6192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCCAT
5'SS Class:
major
3'SS Sequence:
CTTGCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTATTA
Flanking Amino Acid:
MPSRGGKRRSGMDFDDEDGE
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
43.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.4
0.8
0.8
79.4
32.6
Minor 5ss
39.1
-1.2
3.1
48.3
47.3
Minor BPS
61.2
0.35
1.8
75.1
36.3

Associated Gene:

Gene:
ARNT2
Ensembl Gene ID:
ENSAPLG00000010837
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026575
12931469 - 12975112
43644
ENSAPLT00000023489
12872636 - 12975112
102477
ENSAPLT00000042577
12872636 - 12975112
102477
ENSAPLT00000022314
12872636 - 12975112
102477
ENSAPLT00000037640
12872636 - 12975112
102477
ENSAPLT00000011329
12872636 - 12975112
102477
ENSAPLT00000036994
12873009 - 12982844
109836