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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12950493_12982550_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12950493 - 12982550
Intron Length:
32058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
TTTTCCCTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.5
38.7
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
82.7
0.74
0.9
76.7
36.2
Minor 5ss
25.2
-2.8
3.2
31.3
42.9
Minor BPS
65.5
0.57
1.9
88.6
36.6

Associated Gene:

Gene:
ARNT2
Ensembl Gene ID:
ENSAPLG00000010837
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036994
12873009 - 12982844
109836