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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13047102_13052643_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13047102 - 13052643
Intron Length:
5542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTCTGGCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTTTCTGGCACC
Flanking Amino Acid:
LLASGTISGPVTARAVATVW
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.3
72.6
38.9
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
70.3
0.46
1
63
43
Minor 5ss
35
-1.7
3.4
53.7
43.8
Minor BPS
46.9
-0.2
2.5
70.68
41.1

Associated Gene:

Gene:
FAH
Ensembl Gene ID:
ENSAPLG00000010762
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036877
13046788 - 13062682
15895