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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13050384_13051524_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13050384 - 13051524
Intron Length:
1141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGCC
5'SS Class:
major
3'SS Sequence:
TTTAACTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AGCTTTTTAACT
Flanking Amino Acid:
LQDGDEIILTGSDPDANTKP
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
69.1
37.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.3
0.57
0.9
66.4
40.3
Minor 5ss
30.6
-2.2
3.5
42.3
44.6
Minor BPS
71.7
0.76
1.2
78.3
38.2

Associated Gene:

Gene:
FAH
Ensembl Gene ID:
ENSAPLG00000010762
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011271
13050279 - 13062682
12404