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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13052746_13053534_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13052746 - 13053534
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGCCTTTCATT
Flanking Amino Acid:
PTTICRSNFKHMYWTMKQQL
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.8
0.72
0.7
76.1
26
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
59.2
0.37
1.7
76.76
40.6

Associated Gene:

Gene:
FAH
Ensembl Gene ID:
ENSAPLG00000010762
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011271
13050279 - 13062682
12404
ENSAPLT00000037700
13046788 - 13062735
15948
ENSAPLT00000036877
13046788 - 13062682
15895