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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13053582_13054150_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13053582 - 13054150
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
FDINLFVAIKGEGMSTPTTI
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.5
39.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.6
0.8
0.7
85.1
29.4
Minor 5ss
36.2
-1.6
3.2
46.5
48.8
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
FAH
Ensembl Gene ID:
ENSAPLG00000010762
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036877
13046788 - 13062682
15895
ENSAPLT00000011271
13050279 - 13062682
12404
ENSAPLT00000037700
13046788 - 13062735
15948