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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13056802_13057059_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13056802 - 13057059
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCTCATAAAGC
Flanking Amino Acid:
RPVGQMKPDNDKPPVFGACK
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68
38.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
78.8
0.65
0.8
72.8
32.1
Minor 5ss
29.5
-2.3
2.7
34.5
41
Minor BPS
46.3
-0.3
2.2
58.82
46.3

Associated Gene:

Gene:
FAH
Ensembl Gene ID:
ENSAPLG00000010762
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011271
13050279 - 13062682
12404
ENSAPLT00000037700
13046788 - 13062735
15948
ENSAPLT00000036877
13046788 - 13062682
15895