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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13057158_13057613_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13057158 - 13057613
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTCAC
5'SS Class:
major
3'SS Sequence:
GCTCTTTCACAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TGCTCTTTCACA
Flanking Amino Acid:
RGKENALMPNWLHLPVGYHG
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
61.1
39.6
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
61.7
0.26
1.1
61
39.3
Minor 5ss
27.8
-2.5
3
31.3
36.8
Minor BPS
63.1
0.4
1.8
71.5
41.1

Associated Gene:

Gene:
FAH
Ensembl Gene ID:
ENSAPLG00000010762
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037700
13046788 - 13062735
15948
ENSAPLT00000036877
13046788 - 13062682
15895
ENSAPLT00000011271
13050279 - 13062682
12404