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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13058869_13059396_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13058869 - 13059396
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCAAG
5'SS Class:
major
3'SS Sequence:
TCTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGTCTTTCATT
Flanking Amino Acid:
TLRDNAGLRKRAFVPQASAT
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.3
42.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87.7
0.85
0.7
85.6
27.4
Minor 5ss
33.8
-1.8
2.9
40.5
45.5
Minor BPS
66.9
0.61
1.7
83.09
39.1

Associated Gene:

Gene:
FAH
Ensembl Gene ID:
ENSAPLG00000010762
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037700
13046788 - 13062735
15948
ENSAPLT00000036877
13046788 - 13062682
15895
ENSAPLT00000011271
13050279 - 13062682
12404