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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13066884_13067499_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13066884 - 13067499
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
AATGTCTAAACT
Flanking Amino Acid:
FMCRKKVGLTGFECRCGNVY
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
78.5
0.64
0.9
72.5
37.8
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
58.8
0.35
1.8
74.86
42

Associated Gene:

Gene:
ZFAND6
Ensembl Gene ID:
ENSAPLG00000017319
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036600
13065935 - 13100927
34993