About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13076068_13078220_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13076068 - 13078220
Intron Length:
2153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CCTTCTTTAAAA
Flanking Amino Acid:
DSTSTPSMQPSPVSSQSLLT
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
85.1
0.79
0.7
78.2
30.6
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
69.4
0.61
1.4
71.99
40.5

Associated Gene:

Gene:
ZFAND6
Ensembl Gene ID:
ENSAPLG00000017319
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036600
13065935 - 13100927
34993