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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13078333_13079543_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13078333 - 13079543
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTAGTG
Flanking Amino Acid:
QNSNGRISPPATSVSSITES
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
82.2
0.72
0.8
73.3
37.2
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
53
-0
1.9
65.63
42.1

Associated Gene:

Gene:
ZFAND6
Ensembl Gene ID:
ENSAPLG00000017319
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036600
13065935 - 13100927
34993