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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13079714_13100832_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13079714 - 13100832
Intron Length:
21119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTGC
5'SS Class:
major
3'SS Sequence:
TTCTCAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AATTTCTCAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.6
38.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
81.4
0.71
0.8
78.4
33.6
Minor 5ss
46.8
-0.3
2.5
58.3
41.6
Minor BPS
67.2
0.62
1.5
79.68
36.1

Associated Gene:

Gene:
ZFAND6
Ensembl Gene ID:
ENSAPLG00000017319
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036600
13065935 - 13100927
34993