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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13116633_13118255_R

Intron Information:

Intron Rank:
135682
Intron Class:
major
Intron Phase:
Intron Coordinates:
13116633 - 13118255
Intron Length:
1623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
GGCTCTTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
79.7
30.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
76.6
0.6
0.9
73.1
37.3
Minor 5ss
30.1
-2.3
2.6
34
41.5
Minor BPS
49.1
0.01
1.8
65.45
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020403
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019387
13115670 - 13122862
7193