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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13118344_13120029_R

Intron Information:

Intron Rank:
135683
Intron Class:
major
Intron Phase:
Intron Coordinates:
13118344 - 13120029
Intron Length:
1686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGACA
5'SS Class:
major
3'SS Sequence:
ATCTGCATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGTGAATTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
67.3
37.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
73.9
0.54
0.9
65.9
39.1
Minor 5ss
38
-1.4
3.1
49.3
46.7
Minor BPS
48.2
-0.1
2
63.08
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020403
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019387
13115670 - 13122862
7193