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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13120237_13122190_R

Intron Information:

Intron Rank:
135684
Intron Class:
major
Intron Phase:
Intron Coordinates:
13120237 - 13122190
Intron Length:
1954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
AATGGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCTTGTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.7
0.53
1
66
44.4
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
50.6
-0.1
2
63.63
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020403
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019387
13115670 - 13122862
7193