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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13131062_13132525_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13131062 - 13132525
Intron Length:
1464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCACAT
U12 Branch Point Sequence:
CTGTCCCTAACT
Flanking Amino Acid:
AEWIDANGGWENGFLTKFER
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
73.2
39.3
Major BPS
62.5
0.31
1.2
69
38.9
Major PPT
87.3
0.84
0.6
83.5
24.9
Minor 5ss
40.1
-1.1
2.8
44.4
43.5
Minor BPS
70.6
0.72
1.7
84.63
42

Associated Gene:

Gene:
BCL2A1
Ensembl Gene ID:
ENSAPLG00000029218
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036217
13130642 - 13134156
3515