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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13137763_13141168_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13137763 - 13141168
Intron Length:
3406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
ATTTCCTGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATAAGC
Flanking Amino Acid:
QRQSRLLSRKVIGHSRYQES
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
74.5
0.55
0.9
69.6
36.1
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
56
0.17
1.9
70.45
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010727
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011162
13137610 - 13160842
23233