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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13141434_13160498_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13141434 - 13160498
Intron Length:
19065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTTTATTTCATT
Flanking Amino Acid:
DSAREEALAGGGLDLIFMPG
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.8
0.81
0.8
80.2
31.5
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
55.5
0.25
1.9
77.31
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010727
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011162
13137610 - 13160842
23233