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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1316497_1318075_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1316497 - 1318075
Intron Length:
1579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CCCTCTGATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
AACTCAATAAAG
Flanking Amino Acid:
KGYTGTHCGQPVCESGCLNG
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
78
38.6
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
70
0.45
1
63.8
35.9
Minor 5ss
40.3
-1.1
2.8
46.9
41.8
Minor BPS
45.5
-0.4
2
51.02
42.2

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950