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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13231905_13233331_F

Intron Information:

Intron Rank:
131282
Intron Class:
major
Intron Phase:
Intron Coordinates:
13231905 - 13233331
Intron Length:
1427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAACA
5'SS Class:
major
3'SS Sequence:
TGTTACTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATTTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.2
67
38.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.1
0.54
0.9
66.2
40.5
Minor 5ss
45.4
-0.5
2.6
59.1
45.1
Minor BPS
48.1
-0
1.8
68.02
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020518
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026450
13231692 - 13233486
1795